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PAGE\*MERGEFORMAT7 分子实验报告2013030020华天瑞 PreparationofPlasmidDNA,RestrictionEnzymeDigestion,and AgaroseGelElectrophoresis 2014/10/14-21 1Intro 1.1Objective Tolearn ThecharacteristicsofplasmidDNA ThemethodofplasmidDNAmini-preparationbyalkalinelysisandthemeasurementofDNAconcentrationbyspectrophotometer Thecharacteristicsofrestrictionendonuclease HowtouseagarosegelelectrophoresistoseparateDNAs Tounderstand: TheprinciplesofpurificationandquantificationofplasmidDNA 1.2Principle 1.2.1PlasmidandVector Plasmidisasmall,independentlyreplicating,pieceofextrachromosomalcytoplasmicDNA(doublestrandedandusuallycircular)thatiscapableofautonomousreplicationandcanbetransferredfromoneorganismtoanother. VectorserveascarrierstoallowreplicationofrecombinantDNAinthehostcell,usuallyavectorcovers Antibioticresistancegene:suchasampicillinresistantgene,kanamycineresistantgene,andetc. Originofreplication(ori). Multiplecloningsite(MSC)orpolylinker Markergenes:suchasLacZgene. 1.2.2AlkalineLysis(0.2molNaOH+1%SDS) SDSisakindofanionicdetergent.Itcanbreakbacterialcellsanddenatureproteins.Whenbacterialcellwallisbroken,theplasmidDNAandgenomicDNAwillbereleasedoutandbedenaturedinalkalienvironment.Whenthesolutionisneutralizedbyacidicreagent(suchasKAc),theplasmidDNAwillberenaturedrapidlyduetoitssmallersize.Aftercentrifugation,theplasmidDNAwillbeinsupernatant,whilethegenomicDNAwillstayinthesedimentatthebottomofthetubestogetherwithothercelldebris. 1.2.3DNAConcentrationMeasurement Basedonthestrongabsorbanceofbasepairs(A-T,G-C)at260nmUV,theconcentrationofDNAcanbemeasuredbyspectrophotometry.Whendetectedunderneutralcondition,A260isusedtocalculatethenucleicacidconcentrationwhereastheratioofA260/A280canbeusedtoestimatethepurityofnucleicacid(1.8forpureDNA). 1.2.4RestrictionEndonuclease TypeIIREcutsdsDNAatspecificrestrictionsitesonspecificsequence,producingrestrictionfragments. 1.2.5GelElectrophoresis Solidifiedagarosesolutionhascertainsizeofsmallporesofwhichthesizeisdecidedbyconcentration.Intheelectricfieldand